LungMAP seeks to improve lung health by providing the research community with a web-based resource into the processes that regulate lung development.
Joined February 2015
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Please join us for our ATS Postgraduate course, to learn best practices for analysis and integration of lung single-cell and spatial multiomics data using new (published and unpublished) AI enabled workflows. May 17th, San Francisco #ATS2025. Apply here: bit.ly/4gvFhOY
In this issue of Nature Genetics, LungMAP Phase 3 investigators @NeBanovich @sucre_jen and @JKropski, leverage spatial transcriptomics (Xenium) to characterize lung distal remodeling and niche dysregulation in 26 pulmonary fibrosis patients and 9 controls. nature.com/articles/s41588-0…
The latest data release has been posted in the LungMAP OMICS Data Browser (data-browser.lungmap.net/pro…), including CITE-Seq of COVID Lungs, pulmonary alveolar microlithiasis, Alveolar Capillary Dysplasia, Bronchiolitis Obliterans Syndrome Bronchpulmonary Dysplasia and linked viewers.
New updates at LungMAP.net! Check our new collection of ShinyCell and CellxGene viewers, including post-viral lung regeneration (@MorriseyLab), Bronchopulmonary Dysplasia (@lab_xin and @sucre_jen) and Interstitial Lung Disease subtypes (@NeBanovich), now live.
Submissions are now open for our ATS Postgraduate course PG15 Integrative Lung Bioinformatics: From Data to Discovery, May 17th, San Francisco at #ATS2025. Apply here: bit.ly/4gvFhOY
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Join us today at 4pm EST for our LungMAP DCC Office Hours! 🚨
Yan Xu from the LungMAP DCC presenting her current research: Decoding Lymphangioleiomyomatosis (LAM): Cellular Heterogeneity, Niche Environment and Treatment Obstacles
📷Register here: forms.gle/KLcPUnenvZNNyzTX9
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Join us for our second LungMAP DCC Office Hours! 🚨Exploring Genes, Cell types, and Pathways of the Lung 📷 Time: Thursday 4 PM - 5 PM EST (August 22nd 2024)
📷Register here: forms.gle/tpiWkNLvnjqP9TH3A
#LungMAP #CellAtlas #OpenScience
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Join us for our first LungMAP DCC Office Hours! 🚨
Single-cell omics and imaging tools for Lung Biology
🗓️ Date: August 14th (Wednesday) ⏰ Time: 4 PM - 5 PM EST 📋
Register here: forms.gle/V7k4TEiwUpYHh7kM6
#LungMAP #CellAtlas #OpenScience
LungMAP Phase 3 has begun! Focused on pathways and novel therapeutic targets in lung disease.
Let us know what you want to see in this exciting new phase.
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Please come and hear from our LungMAP Data Coordination team on the comprehensive analytical web tools and interfaces available to understand existing lung datasets and analyze your own data.
Excited to be organizing this @bioprotocolbyte roundtable webinar. If you are interested in learning how to tap on @lungmapnet resources in your research, register to attend! Happening next Thursday, 3PM EST! See you then!
LungMAP is pleased to announce our new Portal Ecosystem, now described in @AJRCMB. The ecosystem includes a redesigned web portal, comprehensive single-cell Azimuth, ShinyCell and cellxgene reference atlases for mouse and human lung... and much more. doi.org/10.1165/rcmb.2022-01…
A census of the lung: CellCards from LungMAP, is now online at Developmental Cell. CellCards provides a functional annotation of cell types within the lung and single cell data for a rigorous catalogue of cell lineages as an evolving online resource. cell.com/developmental-cell/…
LungMAP is happy to share our recent preprint describing a series of interconnected LungMAP web portals to provide supervised single-data analyses, exploration of integrated datasets and new community resources. biorxiv.org/content/10.1101/…
First, LungMAP.net now serves as gateway portal to a series of omics centric portals (single-cell, bulk, proteomics, metabolomics) and a new enhanced image analysis portal (omero.lungmap.net).
High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip dev.lungmap.net/news-and-eve…
Single-cell proteomics using nanoPOTS, from PNNL investigators including LungMAP PI's @GrmyClair and @P3p7id3.
A PNNL-developed nested nanoPOTS chip that allows researchers to analyze hundreds of proteins in individual cells at the same time is a step closer to commercialization with a new R&D license agreement signed between @SCIENION, @Cellenion, & @EMSLscience.
bit.ly/3HwbTrj
Exciting new study from LungMAP Investigators at PNNL to explore proteome variation the human lung across 50 pediatric and adult donors spanning nearly 9k proteins.
"The idea was to learn things about lung development that we have not seen with previous biomedical studies."
A new study offers new understanding of lung development and diseases that affect millions of people.
Read more ⬇️ @lungmapnet bit.ly/3kLh510
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Pre-print describing a new approach (scTriangulate) for integrating cell atlases and multimodal single-cell omics data using Game Theory from LungMAP DCC investigators. biorxiv.org/content/10.1101/…
Exciting new LungMAP resource from the Aronow lab leveraging ToppCell to explore single-cell COVID-19 immune host responses. sciencedirect.com/science/ar…
The LungMAP dbGAP study is now online with human scRNA-Seq and snATAC-Seq now available for download. ncbi.nlm.nih.gov/projects/ga…