
Life Science Researcher @AnthropicAI
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Joined November 2017
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What do vault particles do? Scientists have been asking this for 40 years. Our biology team at Anthropic set out to tackle this long-standing open question in cell biology, working with Claude.
We haven't uncovered their biological function yet, but we've found something new: vault proteins in prokaryotes that assemble into complexes that are larger than human vaults. And we show that we can engineer their shapes to produce even larger nanocapsules!
The mystery of vaults goes deeper than anyone knew...
Read the blog and technical report to learn more!
Blog: anthropic.com/research/inves…
Technical report: www-cdn.anthropic.com/76e55f…
Very grateful to have such fantastic coauthors who made this research project possible, including Januka Athukoralage, @ntperry13, @PeterHYoon, @ekabrams, and @amirshanehsaz. A big thank you to Dr. Leonard Rome, who discovered vaults in 1986, for providing feedback on the technical report. Thank you to @FutureHouseSF for supporting me as a research fellow when I first started learning about vaults. And, of course, grateful to my many @AnthropicAI teammates that work tirelessly to make Claude the best model for biology!
Video and sound made by Claude (with artistic direction from @ntperry13). Showing the new bacteriophage-derived vault structure that we solved.
Our vault paper is now up on biorxiv: biorxiv.org/content/10.64898…
Matt Durrant retweeted
"You must be psychic" That was the reply Lenny Rome, aka the Vault Guy, sent when asked him a few weeks ago if he has sought help from AI companies to solve the elusive function of the odd cellular structures he discovered decades ago. Rome hadn't, but Anthropic called him. 1/2
Matt Durrant retweeted
Everyone should check out Leonard Rome’s YouTube channel. He discusses vaults, their history, his career, and some of the sociopolitics of academic publishing
youtu.be/GVcQcbqh8qE?is=B-Kc…
Matt Durrant retweeted
Exclusive: Artificial intelligence has tackled a mystery that has flummoxed cell biologists for decades.
Today, Anthropic reports its key #AI model, Claude, has helped unearth new clues about vaults—strange, barrellike structures, found by the thousands in animal and plant cells, that still have no known function despite scores of studies.
In a blog post and related preprint, Anthropic describes how its small team of in-house biologists, guided by Claude, produced the first direct evidence that bacteria, viruses, and perhaps other simple microbes also make the odd structures.
Learn more: scim.ag/4eRMQRV
Matt Durrant retweeted
Thrilled to share new work from our experimental biology lab at @AnthropicAI. Led by world-class biochemist Januka Athukoralage, we built a rapid method for the isolation and structural characterization of vaults. It turns out these massive structures are not just found in eukaryotic cells, but also in prokaryotes and even phages. We solve the structure of one of these phage vaults, and then demonstrate we can engineer additional repeats into the wall to make it bigger.
One thing I can't get over about these vaults. They seem to be widespread across life - we assembled them from 8 different bacteria and bacteriophages. But they are just so massive - bigger than ribosomes, AAV, and even some phage capsids. Why devote so much energy to making these huge complexes? They have to be doing something useful - I hope that's the question that gets answered next.
Amazing collaboration with @PeterHYoon, @amirshanehsaz, @eric_kabrams, and @mgdurrant! Grateful to our team for making Claude an amazing labmate and to Anthropic for supporting this type of work on fundamental biology.
Natural mysteries abound - let's get to solving them!
Links here:
Blog: anthropic.com/research/inves…
Technical report: www-cdn.anthropic.com/76e55f…
Matt Durrant retweeted
We’re sharing how our biology research team worked with Claude to map the first 3D structure of a vault particle from bacterial life.
Vault particles are a longstanding mystery. They are barrel-shaped objects, among the largest protein structures found in our cells. They were first discovered by Leonard Rome and Nancy Kedersha in 1986, but their function remains unknown.
With Claude, we’ve found results that might bring us closer to solving that mystery.
Until now, vaults were only known in the cells of complex things like animals and plants. We have shown that similar proteins from bacteria (and the viruses that infect them) can also assemble into vaults. Finding the structures in these simpler forms of life may make it easier to investigate their function in our own cells.
For our life sciences team, the project was also a demonstration of the potential (and the limitations) of using AI to accelerate science.
In our full piece, we discuss how Claude was able to dramatically speed up some stages—manually determining the vault particle’s structure would have taken weeks to months of painstaking work, but here it took days. We also discuss how Claude made some simple mistakes along the way, and how we collaborated with our machine learning researchers to address them.
Read more: anthropic.com/research/inves…
Matt Durrant retweeted
It seems like a lot of folks are missing the larger point. There is something pretty cool here: "genome gazing".
As someone who spent the last decade working on (or adjacent to) gene discovery projects, the armada/swarm of agents look capable of this.
This is the "expert intuition" skillset that is that's the difference between a gene discovery project capturing "novelty" or not. You know it when you see it.
This human side of this team is comprised of some of the best people at this type of work (my somewhat biased opinion) and they definitely know this.
They likely know that a "reverse transcriptase" doing weird things with a cognate RNA in phage biology is a pretty reliable place for very interesting and creative evolutionary outcomes. I've been saying for a while that RT-centric ideation is probably the most reliable place to start for new mechanisms in biology. They also know that identification/ideation of important RNA elements and ideation is a hard problem if you don't have a prior to look for (ex. CRISPR repeats).
I've grappled with this sort of problem in a pre-agentic and so have at least 4 of the authors on the technical report.
They know the true uplift here is genome gazing.
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
Matt Durrant retweeted
Biology manifests through sequences, and we can learn a lot from examining sequence databases. That is traditionally hard because the databases are huge. So we put troops of Claude on a mission: find new partner genes of reverse transcriptases (RTs) in 1.9B protein clusters.
We were surprised by what came back. Claude turned up a strange CRISPR-like RT system we didn't ask for. It is an RT from jumbo phages with an array of repeats upstream and a dedicated partner gene. We call these array-associated RTs (ART).
Matt Durrant retweeted
ART systems are one of many unusual RTs that are being discovered. UG27 RTs were recently shown to co-occur with several copies of ncRNAs, a discovery made possible through a breakthrough in genomic language modeling that enables covariation analysis from @_David_Li and @garykbrixi.
biorxiv.org/content/10.64898…
We're excited to see that Claude was able to make an analogous discovery by seeing DNA repeats by eye, and are curious to learn what other hidden messages we might be able to see through Claude!
Matt Durrant retweeted
Replying to @BrianHie
@BrianHie's lab is just on fire! Congratulations David and Garyk and the whole team... this is so cool!
Many important bacterial non-coding RNAs and structural elements remain undiscovered. To help, @_David_Li, @garykbrixi, @mfgrp, @BrianHie & team introduce Minerva, which uses a genome language model to predict RNA base pairing, repeats, & other interactions from sequence alone.
A few thoughts on Anthropic’s ART discovery, since it’s close to the work we do:
The biology is intriguing. In phages, an unusual reverse transcriptase sits next to a partner gene and an array of DNA repeats. The team found that the array produces distinct short RNAs.
It’s tempting to compare this with CRISPR or retrons, but we don’t yet know what ART does. Whether the RNAs guide anything, or whether the system is programmable, remains an open question.
I’m just as interested in how they found it. About 950 Claude agent sessions ran over 21 hours, surveyed ~200,000 reverse transcriptases, and produced 19 reports. One agent looked at the DNA next to an RT and spotted a repeat array outside the features the search had set out to examine.
It followed that observation, compared it with known systems, checked the literature, and gave the scientists something concrete to investigate.
To me, that’s the opportunity: scaling scientific attention. We have more biological data than any team can inspect closely. Agents can help us notice the odd cases and show their work.
There’s still reason to be careful. Repeat-rich regions in assembled phage genomes can be tricky, so I’d want to see raw read support across the arrays and their boundaries in independent isolates. And the most important experiment is still ahead: what does ART actually do?
I think discovery will become a tighter loop. Agents propose hypotheses, predictive models help choose experiments, and automated labs generate results that inform the next round.
We’re working toward that at @Xaira_Thera, bringing agentic workflows together with models such as X-Cell and wet lab experiments. I’m excited by how much more biology we may be able to explore when each experiment helps us decide what to test next.
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
One takeaway from our technical report about ART is that you should try telling Claude to actually “look” at the DNA sequences you’re studying, not just analyze a FASTA with bioinformatics tools. You may be surprised to see what it can figure out!
Starting today, 10,000 scientists across every field, from math to chemistry to physics and more, can get Claude through our new Claude Team plan for scientists. Standard seats are free, and premium seats with 5x usage limits are $15 per month, an 80% discount, for one year.
Claude is becoming increasingly capable of scientific work, with recent progress on problems from advanced physics calculations to protein design. Alongside that progress, we've been investing in the research community: Claude Science launched in June, and our AI for Science program funds high-impact projects with free credits. Today's expansion builds on both.
Principal investigators (or equivalent) at academic and nonprofit research institutions can sign up, then add the researchers in their group. Over the coming months, we plan to extend the program well beyond the initial 10,000 seats.
Learn more: claude.com/programs/team-pla…
If you find our work on ART interesting, see this recent paper from @_David_Li and @garykbrixi in the @BrianHie lab, who are using genomic language models for biological discovery. It's fantastic work and includes their announcement of UG27, another array-associated RT system, which our ART findings complement nicely. biorxiv.org/content/10.64898…
Matt Durrant retweeted
Today we announced the Claude-led discovery of a molecular machine that we suspect could represent a new gene editing mechanism. Its precise function, biotechnological utility (if any), or level of significance is not yet clear, but at minimum it is work I would have been proud to do as a PhD student. The work was done mostly, though not entirely, by Claude: our life sciences team suggested a broad area of research, Claude read through the literature and a bunch of genome data and discovered something interesting, then Claude proposed experiments to verify the discovery and our team carried them out.
It’s easy to dismiss this as a one-off or curiosity, but we’ve repeatedly seen a pattern where AI performance in new intellectual domains goes from weak to superhuman in a matter of a few years. In 2023 models struggled to do math at the level of an average high-school student. In 2024 they started to do well on math competitions for the best high-schoolers in the country, in 2025 they started to solve minor open problems, in early 2026 more significant open problems, and in late 2026 they are beginning to solve the top few open problems in all of mathematics. We believe AI for biology is on a similar exponential trend.
The main difference between biology and mathematics, of course, is that math can be done purely theoretically, while biology requires experimentation. Some have used this to draw the conclusion that AI’s utility in biology will be limited. We think this is wrong. As we’ve demonstrated today, humans can collaborate with AI to perform the experiments, validate key results in a few weeks and, if necessary, work with the AI to iterate on what they find. Eventually it may even be possible for Claude itself to safely perform the experiments by autonomously controlling lab equipment, with appropriate safeguards in place, but we aren’t doing that today (our lab is also a BSL1/BSL2 facility that doesn't handle materials dangerous to humans).
More broadly, biomedical advancement has many stages — from fundamental biology discoveries, to translational research, to drug discovery, clinical trials, and finally the actual delivery of medicines and health care to patients. We are also interested in these later stages, but even simply accelerating the first stage of fundamental biological discoveries has the potential to speed up and broaden the entire pipeline. Improving our understanding of biology and sharpening biologists’ tools can drive forward all of the later stages, for example by identifying new drug targets, finding new therapeutic modalities, allowing for more precise measurement, and speeding up the experimental loop which itself further accelerates our understanding of biology. This will not in itself speed up clinical trial times, but if it succeeds it could greatly increase the number of promising candidates that go into the pipeline — an increase in throughput even though latency remains.
In Machines of Loving Grace, I wrote about AI’s potential to “cure most diseases in 5-10 years” — a goal that sounds impossible, but one I believe is just barely possible if AI is applied to every stage of the pipeline. The first step is showing that AI can first help with, and then drive, biological discoveries.
Claude’s discovery is the latest in a line of related prior work that goes back decades, beginning with systems like CRISPR, and continuing with discoveries like the bridge recombinase and VIPR in the past few years. Recently, there has been heightened interest in systems based on reverse transcriptase (RT) enzymes, the enzyme underlying the system Claude identified. And most recently, a Stanford team working independently described a novel RT system with an associated non-coding array that is in some ways similar to the one Claude found, though they are distinct systems that evolved independently from each other. I believe that we’re at the very beginning of finding such systems and developing them into powerful tools for biotechnology.
I’m proud of the resources Anthropic has invested in accelerating the public benefits of AI through the life sciences, and we’re aiming both to grow our life sciences team and to work with other scientists to extend this approach to a broad range of problems. If you have a proposal for a research collaboration or are interested in joining our life sciences team, please reach out.
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
Very excited to share some more details about what we’re working on at Anthropic! We’ve set up a molecular biology lab and a fantastic team to test Claude’s ideas at the bench. We’re sharing an early example of how Claude can initiate new discoveries, with more work to come soon. We have learned a lot so far, and we’re using what we’ve learned to help make Claude the best and safest model for biology.
Please reach out if you have ideas for how to use Claude to accelerate fundamental biology research!
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
Here's the link to our technical report describing in detail how Claude found this new enzyme system: www-cdn.anthropic.com/225736…
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Matt Durrant retweeted
VIPR is now out in @ScienceMagazine!
What started with a mysterious RNA led us to an unexpected way of recognizing DNA, as well as some clues to CRISPR’s origins.
So happy to share these two papers with an incredible team. Links below; original discovery thread here ↓


















